111-126.Īn alternative method for cropping a stack is found with Plugins › Stacks › Crop (3D) After selecting ‘OK’, you will be presented with panels of the ZY and XZ planes, as well as the original stack, where you can use the mouse to crop the stack in any of the three directions. Viergever, Quantitative Evaluation of Convolution-Based Methods for Medical Image Interpolation, Medical Image Analysis, vol. More details about each TransformJ plugin can be found on this website.Į. Images and stacks can be resized and rotated with native functions or with the more sophisticated TransformJ set of plugins from Erik Meijering. Control the position of individual slices or groups of slices.Stack Sorter: Image › Stacks › Tools › Stack Sorter. No automatic resizing, so the smaller stack should not be used as the destination.Superimpose the source by specifying the X and Y coordinates for the location of the upper left hand corner.Used with two stacks, one is the source and the other the destination.Stack Inserter: Image › Stacks › Tools › Insert Interleave is the reverse process and may be applied to two stacks at a time.Deinterleave will distribute slices between new stacks as indicated by the specified number of channels.(De)Interleave: Image › Stacks › Tools › DeInterleave and Interleave If the two stacks contain a different number of slices, the shorter will have blank slices appended to the end so they are the same length.Stack Combine: Image › Stacks › Tools › Combine For example, concatenating two 25-slice stacks would result in a 25-slice stack with two different time points at each slice.
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